Publications
2023
First Superferromagnetic Remanence Characterization and Scan Optimization for Super-Resolution Magnetic Particle Imaging Journal Article
In: NANO LETTERS, 2023, ISSN: 1530-6984.
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations Journal Article
In: BIOINFORMATICS, vol. 39, no. 2, 2023, ISSN: 1367-4803.
The birth and evolution of solvated electrons in the water Journal Article
In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 120, no. 8, 2023, ISSN: 0027-8424.
Force Decomposition Analysis: A Method to Decompose Intermolecular Forces into Physically Relevant Component Contributions Journal Article
In: JOURNAL OF PHYSICAL CHEMISTRY A, vol. 127, no. 7, pp. 1760-1774, 2023, ISSN: 1089-5639.
Learning Correlations between Internal Coordinates to Improve 3D Cartesian Coordinates for Proteins Journal Article
In: JOURNAL OF CHEMICAL THEORY AND COMPUTATION, vol. 19, no. 14, pp. 4689-4700, 2023, ISSN: 1549-9618.
On the Sensitivity and Affinity of Gold, Silver, and Platinum Surfaces against the SARS-CoV-2 Virus: A Comparative Computational Study Journal Article
In: JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2023, ISSN: 1549-9596.
Programming multicellular assembly with synthetic cell adhesion molecules Journal Article
In: NATURE, vol. 614, no. 7946, pp. 144+, 2023, ISSN: 0028-0836.
In vivo Sealing of Fetoscopy-Induced Fetal Membrane Defects by Mussel Glue Journal Article
In: FETAL DIAGNOSIS AND THERAPY, vol. 49, no. 11-12, pp. 518-527, 2023, ISSN: 1015-3837.
TAxI-peptide targeted Cas12a ribonuclease protein nanoformulations increase genome editing in hippocampal neurons Journal Article
In: JOURNAL OF CONTROLLED RELEASE, vol. 354, pp. 188-195, 2023, ISSN: 0168-3659.
HIV silencing and cell survival signatures in infected T cell reservoirs Journal Article
In: NATURE, vol. 614, no. 7947, 2023, ISSN: 0028-0836.
In: MAGNETIC RESONANCE IN MEDICINE, vol. 89, no. 2, pp. 774-786, 2023, ISSN: 0740-3194.
Quantifying the local adaptive landscape of a nascent bacterial community Journal Article
In: NATURE COMMUNICATIONS, vol. 14, no. 1, 2023.
Highly Altered State of Proton Transport in Acid Pools in Charged Reverse Micelles Journal Article
In: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2023, ISSN: 0002-7863.
Highly Altered State of Proton Transport in Acid Pools in Charged Reverse Micelles Journal Article
In: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, vol. 145, no. 3, pp. 1826-1834, 2023, ISSN: 0002-7863.
Efficient Calculation of NMR Shielding Constants Using Composite Method Approximations and Locally Dense Basis Sets Journal Article
In: JOURNAL OF CHEMICAL THEORY AND COMPUTATION, vol. 19, no. 2, pp. 514-523, 2023, ISSN: 1549-9618.
JBrowse Jupyter: a Python interface to JBrowse 2 Journal Article
In: BIOINFORMATICS, vol. 39, no. 1, 2023, ISSN: 1367-4803.
High Sensitivity of Mobile Phone Microscopy Screening for Schistosoma haematobium in Azaguie, Cote d'Ivoire Journal Article
In: AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, vol. 108, no. 1, pp. 41-43, 2023, ISSN: 0002-9637.
Elastic Fluorescent Protein-Based Down-Converting Optical Films for Flexible Display Journal Article
In: BIOMACROMOLECULES, vol. 24, no. 1, pp. 118-131, 2023, ISSN: 1525-7797.
2022
Author Correction: Pan-cancer analysis of whole genomes Journal Article
In: NATURE, 2022, ISSN: 0028-0836.
In: PHARMACEUTICS, vol. 14, no. 12, 2022.
Rheology and Gelation of Hyaluronic Acid/Chitosan Coacervates Journal Article
In: BIOMOLECULES, vol. 12, no. 12, 2022.
Old plasma dilution reduces human biological age: a clinical study Journal Article
In: GEROSCIENCE, vol. 44, no. 6, pp. 2701-2720, 2022, ISSN: 2509-2715.
Recombinant factor VIII protein aggregation and adsorption at the liquid-solid interface Journal Article
In: JOURNAL OF COLLOID AND INTERFACE SCIENCE, vol. 628, no. A, pp. 820-828, 2022, ISSN: 0021-9797.
In: FRONTIERS IN DENTAL MEDICINE, vol. 3, 2022.
Effects of Ionic Liquids on the Stabilization Process of Gold Nanoparticles Journal Article
In: JOURNAL OF PHYSICAL CHEMISTRY B, vol. 126, no. 46, pp. 9617-9631, 2022, ISSN: 1520-6106.
Phototoxic effects of nonlinear optical microscopy on cell cycle, oxidative states, and gene expression Journal Article
In: SCIENTIFIC REPORTS, vol. 12, no. 1, 2022, ISSN: 2045-2322.
TripletProt: Deep Representation Learning of Proteins Based On Siamese Networks Journal Article
In: IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, vol. 19, no. 6, pp. 3744-3753, 2022, ISSN: 1545-5963.
The influence of molecular design on structure-property relationships of a supramolecular polymer prodrug Journal Article
In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 119, no. 44, 2022, ISSN: 0027-8424.
The Availability of Sharps Disposal Bins: A Survey of Airports in California Journal Article
In: JOURNAL OF DIABETES SCIENCE AND TECHNOLOGY, vol. 16, no. 6, pp. 1356-1362, 2022, ISSN: 1932-2968.
The Need for Sharps Waste Disposal Guidelines for Commercial Airports Journal Article
In: JOURNAL OF DIABETES SCIENCE AND TECHNOLOGY, vol. 16, no. 6, pp. 1370-1375, 2022, ISSN: 1932-2968.
Multiplexed microfluidic platform for stem-cell derived pancreatic islet β cells Journal Article
In: LAB ON A CHIP, vol. 22, no. 22, pp. 4430-4442, 2022, ISSN: 1473-0197.
Small-animal blood exchange is an emerging approach for systemic aging research Journal Article
In: NATURE PROTOCOLS, vol. 17, no. 11, pp. 2469+, 2022, ISSN: 1754-2189.
Cyclical depressurization degranulates platelets in an agonist-free mechanism of platelet activation Journal Article
In: PLOS ONE, vol. 17, no. 9, 2022, ISSN: 1932-6203.
Biomimetic virus-based soft niche for ischemic diseases Journal Article
In: BIOMATERIALS, vol. 288, 2022, ISSN: 0142-9612.
Design of a flexing organ-chip to model in situ loading of the intervertebral disc Journal Article
In: BIOMICROFLUIDICS, vol. 16, no. 5, 2022.
IDPConformerGenerator: A Flexible Software Suite for Sampling the Conformational Space of Disordered Protein States Journal Article
In: JOURNAL OF PHYSICAL CHEMISTRY A, vol. 126, no. 35, pp. 5985-6003, 2022, ISSN: 1089-5639.
In: ACS PHARMACOLOGY & TRANSLATIONAL SCIENCE, vol. 5, no. 8, pp. 652-667, 2022.
Rapid detection of SARS-CoV-2 RNA in saliva via Cas13 Journal Article
In: NATURE BIOMEDICAL ENGINEERING, vol. 6, no. 8, pp. 944+, 2022, ISSN: 2157-846X.
Systemic induction of senescence in young mice after single heterochronic blood exchange Journal Article
In: NATURE METABOLISM, vol. 4, no. 8, pp. 995+, 2022.
Genome-wide bidirectional CRISPR screens identify mucins as host factors modulating SARS-CoV-2 infection Journal Article
In: NATURE GENETICS, vol. 54, no. 8, pp. 1078+, 2022, ISSN: 1061-4036.
Coevolution of motor cortex and behavioral specializations associated with flight and echolocation in bats Journal Article
In: CURRENT BIOLOGY, vol. 32, no. 13, pp. 2935+, 2022, ISSN: 0960-9822.
New Views of Old Proteins: Clarifying the Enigmatic Proteome Journal Article
In: MOLECULAR & CELLULAR PROTEOMICS, vol. 21, no. 7, 2022.
Histologically resolved multiomics enables precise molecular profiling of human intratumor heterogeneity Journal Article
In: PLOS BIOLOGY, vol. 20, no. 7, 2022, ISSN: 1544-9173.
Identifying cell state-associated alternative splicing events and their coregulation Journal Article
In: GENOME RESEARCH, vol. 32, no. 7, pp. 1385-1397, 2022, ISSN: 1088-9051.
Decoding the Effect of Hydrostatic Pressure on TRPV1 Lower-Gate Conformation by Molecular-Dynamics Simulation Journal Article
In: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, vol. 23, no. 13, 2022.
The molecular mechanism of load adaptation by branched actin networks Journal Article
In: ELIFE, vol. 11, 2022, ISSN: 2050-084X.
NewtonNet: a Newtonian message passing network for deep learning of interatomic potentials and forces Journal Article
In: DIGITAL DISCOVERY, vol. 1, no. 3, pp. 333-343, 2022.
Impact of a 7-day homogeneous diet on interpersonal variation in human gut microbiomes and metabolomes Journal Article
In: CELL HOST & MICROBE, vol. 30, no. 6, pp. 863+, 2022, ISSN: 1931-3128.
A multi-tasking polypeptide from bloodworm jaws: Catalyst, template, and copolymer in film formation Journal Article
In: MATTER, vol. 5, no. 6, 2022, ISSN: 2590-2393.
GrainGenes: a data-rich repository for small grains genetics and genomics Journal Article
In: DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, vol. 2022, 2022, ISSN: 1758-0463.