See course descriptions at the Berkeley Academic Guide – Bioengineering
| Course # | Course title (units) | Notes |
| BioE 101 | Instrumentation in Biology and Medicine (4) | |
| BioE 102 | Biomechanics (4) | |
| BioE 103 | Engineering Molecules 2 (4) | Students will receive no credit for Bioengineering 103 after completing Chemistry 120B, Molecular Cell Biology C100A/Chemistry C130, or Physics 137. |
| BioE 104 | Biological Transport Phenomena (4) | |
| BioE 110 | Biomedical Physiology for Engineers (4) | |
| BioE 111 | Functional Biomaterials Development and Characterization (4) | |
| BioE C112 | Molecular Cell Biomechanics (4) | |
| BioE 113 | Stem Cell and Technologies (4) | These courses wont be offered as of Fall 16. These courses have been replaced by BioE 114. |
| BioE 114 | Cell Engineering (4) | |
| BioE 115 | Cell Biology Laboratory for Engineers (4) | |
| BioE 116 | Cell and Tissue Engineering (4) | These courses wont be offered as of Fall 16. These courses have been replaced by BioE 114. |
| BioE C117 | Structural Aspects of Biomaterials (4) | |
| BioE C118 | Biological Performance of Materials (4) | |
| BioE C119 | Orthopedic Biomechanics (4) | |
| BioE 121 | Introduction to Micro and Nanobiotechnology: BioMEMs (3) | |
| BioE 121L* | BioMems and BioNanotechnology Laboratory (4) | |
| BioE 124 | Basic Principles of Drug Delivery (3) | |
| BioE C125 | Introduction to Robotics (4) | |
| BioE 131 | Introduction to Computational Molecular and Cell Biology (4) | |
| BioE 132 | Genetic Devices (4) | |
| BioE 135 | Frontiers in Microbial Systems Biology (4) | |
| BioE C136L | Laboratory in the Mechanics of Organisms (3) | |
| BioE C137 | Designing for the Human Body (3) | |
| BioE 140L | Synthetic Biology Lab (4) | |
| BioE 144 | Introduction to Protein Informatics (4) | |
| BioE 144L | Protein Informatics Lab (2) | |
| BioE 147 | Principles of Synthetic Biology(4) | |
| BioE 148 | Bioenergy and Sustainable Chemical Synthesis: Metabolic Engineering and Synthetic Biology Approaches (3) | |
| BioE 150 | Introduction of Bionanoscience and Bionanotechnology (4) | |
| BioE 151 | Micro/Nanofluidics for Bioengineering and Lab-On-A-Chip (4) | |
| BioE 163 | Principles of Molecular and Cellular Biophotonics (4) | |
| BioE 163L | Molecular and Cellular Biophotonics Laboratory (4) | |
| BioE 164 | Optics and Microscopy (4) | |
| BioE C165 | Image Processing and Reconstruction Tomography (4) | |
| BioE 168L | Practical Light Microscopy (3) | |
| BioE C181 | The Berkeley Lectures on Energy: Energy from Biomass — Bioengineering | |
| BioE 190** | Advanced Topics in Bioengineering (1-4) | |
| BioE 192 | Senior Design Projects (4) | Senior Standing |
** course must be 3 units or more