See course descriptions at the Berkeley Academic Guide – Bioengineering
| Course # | Course title (units) | Notes |
| BioE 101 | Instrumentation in Biology and Medicine | |
| BioE 102 | Biomechanics (4) | |
| BioE 103 | Engineering Molecules 2 (4) | Students will receive no credit for Bioengineering 103 after completing Chemistry 120B, Molecular Cell Biology C100A/Chemistry C130 |
| BioE 104 | Biological Transport Phenomena (4) | |
| BioE 105 | Engineering Devices 1 (4) | |
| BioE 110 | Biomedical Physiology for Engineers (4) | |
| BioE C131 | Introduction to Computational Molecular and Cell Biology | |
| BioE 144L | Protein Informatics Laboratory (3) |